Yes, a good website that asks me to disable the blocker will get my repeated visits while being able to show me ads (given that the ads are not too obnoxious). A website that just doesn't work with a blocker enabled will be ignored in the future.
I have seen a few that won't work unless I disable adblock but haven't stumbled on any that ask but still work with it. I doubt many would disable it if they don't have to. Do you have an example?